Run DNAPlotter with the appropriate command line options for the file type of file (i.e. GFF3, EML or GenBank)
DNAPlotter is easy to use, just specify the chromosomes, base positions and optionally the features to display. If DNAPlotter cannot find the DNA sequences it will return a progress dialog.
DNAPlotter uses Artemis to plot the sequences and the output may be configured to export the image to a pdf.

CircularPlotter is a circular plot viewer and can be used to view, analyse and edit circular chromosomes. It provides circular plot components, including sequence, banding, annotation, etc. This project was created to extend the functionality of Jemboss CircularPlot and to provide better integration with the tools used in lab work.
CircularPlotter Description:
Run CircularPlotter with the appropriate command line options for the file type of file (i.e. EMBL, GenBank or GFF3)
CircularPlotter is easy to use, just specify the chromosomes, base positions and optionally the features to display. If CircularPlotter cannot find the DNA sequences it will return a progress dialog.
CircularPlotter uses Artemis to plot the sequences and the output may be configured to export the image to a pdf.

Whats New

* create a new folder or update an existing one by specifying the path
* edit the sequence or analyse using one of the programs in this folder
* look up the sequence and display the graphical layout
* link to and open a genome browser

Latest Release

Read the Documentation

This module is part of Jemboss, the open source integrated solution for working with sequence data.

View and download the latest binary packages

Jemboss modules are available in binary packages for Windows, Mac OS X and most Linux distributions.
You can download the latest packages from our downloads page.

Docs for this module are available online as PDFs.

Wiki

This module has a public wiki. You can view and contribute to this wiki here.

Mailing Lists

For issues or bug reports, join the Jemboss mailing list.

Licence

The Jemboss distribution is released under the GNU GPL.
You can see the full licence at the top of every module file.

Jemboss is copyright (c) 2003-2018, Max de Rotis and the

Keymacro allows the creation of macros (named sequences) which can be then used to generate new data. Some of the formats this macro can generate are EMBL, GenBank, GFF3, BioVIO, BAM and FASTQ. The format GFF3 uses the keyword “NAME” to identify the sequences.

pEpiDesigner is a tool for the design of oligonucleotide primers used in PCR, RPA, APA and LAMP. It was designed to ease the design process by accepting a set of parameters that are provided with the genes of interest and provide output in many formats: a chromatogram, a diagram (graphical representation of the primers), a table, a PDF-doc, a.zip-file of the various formats, etc. It is also possible to create a pool of primers from different sets of genes from one or more genomes.

The interface is pretty straightforward, the gene of interest is put into the input text box, the GC content is selected, the lengths of the primers are put into the two text boxes provided, and the oligo names are entered (without ‘1’ and ‘2’ attached to the names, and with the ‘-‘ symbol at the end). The output from the application can be saved as a pdf (with all the files available in the output folder) or in.zip-file format. The file can be opened in a PDF reader or copied and pasted into a word-processor.

If you are working with a lot of genes from one genome, you can use the CreateOligo() function to generate primers for as many genes as you wish. You can also select different genome from which to create primers using the “Choose a genome” button (the available genomes can be seen by clicking the “List genomes” button).

The primers can be generated for a specific organism, for a set of organisms (i.e. both Human and Chimpanzee), or for a set of organisms and tissues (the input for the function includes “>” and a comma-separated list of tissues).

The user can select from a range of DNA-polymerases (FAM, Pfu, Phusion, Tth, Vent and Pwo).

You can also select from a range of buffers (Tris, Mg+, Bicarbonate,
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DNAPlotter has been designed to be a useful tool for researchers working on the processing of plasmid DNA, and is ideally suited for more complicated cases, such as the detailed examination of long plasmids and the identification of questionable or novel sequences.

DNAPlotter has been designed to be a useful tool for researchers working on the processing of plasmid DNA, and is ideally suited for more complicated cases, such as the detailed examination of long plasmids and the identification of questionable or novel sequences.

DNAPlotter has been designed to be a useful tool for researchers working on the processing of plasmid DNA, and is ideally suited for more complicated cases, such as the detailed examination of long plasmids and the identification of questionable or novel sequences.

DNAPlotter has been designed to be a useful tool for researchers working on the processing of plasmid DNA, and is ideally suited for more complicated cases, such as the detailed examination of long plasmids and the identification of questionable or novel sequences.

DNAPlotter has been designed to be a useful tool for researchers working on the processing of plasmid DNA, and is ideally suited for more complicated cases, such as the detailed examination of long plasmids and the identification of questionable or novel sequences.

DNAPlotter has been designed to be a useful tool for researchers working on the processing of plasmid DNA, and is ideally suited for more complicated cases, such as the detailed examination of long plasmids and the identification of questionable or novel sequences.

DNAPlotter has been designed to be a useful tool for researchers working on the processing of plasmid DNA, and is ideally suited for more complicated cases, such as the detailed examination of long plasmids and the identification of questionable or novel sequences.

DNAPlotter has been designed to be a useful tool for researchers working on the processing of plasmid DNA, and is ideally suited for more complicated cases, such as the detailed examination of long plasmids and the identification of questionable or novel sequences.

DNAPlotter has been designed to be a useful tool for researchers working on the processing of plasmid DNA, and is ideally suited for more complicated cases, such as the detailed examination of long plasmids and the identification of questionable or novel sequences.

DNAPlotter has been designed to be a useful tool for researchers working on the processing of plasmid DNA, and

DNAPlotter is a collaborative project between Jemboss and Artemis. It makes use of the existing circular plot in Jemboss and the Artemis sequence libraries. The resulting images can be easily annotated using Artemis.
The DNAPlotter application can be used to generate images of circular and linear DNA maps to display regions and features of interest. The images can be inserted into a document or printed out directly.

Other Jemboss Features:

Cloning: Clone the genomic sequences of interest or existing clones using a “clone” action in Jemboss and add them to the database

Sequence comparison: View the homology of regions in a nucleic acid or protein using the Artemis alignment and colour the areas as you wish.

Output: Export the image to a format such as tiff, jpg, gif, pdf and more.

My Review:

I was given a free copy of Jemboss and I thought I would give it a try. I was amazed at the simplicity of the program and the ease of use. Within no time at all I was able to produce some amazing results.

The main features are cloning of sequences of interest, making all kinds of linear maps using the sequence information, making clone maps, clone sequence graphs, see homology using the Artemis alignment and export the results to a wide range of formats.

The result is a very informative and easy to use program. The map editor in Jemboss allows you to display a number of pre-created maps and I found that those were very useful. For example, you can create a map of restriction sites and associate them with a gene of interest.

You can download the program from here:

It’s free but will cost money if you want to extend the functionality or create your own maps and submit them to Jemboss.

About:

DNAPlotter is a collaborative project between Jemboss and Artemis. It makes use of the existing circular plot in Jemboss and the Artemis sequence libraries. The resulting images can be easily annotated using Artemis.

The DNAPlotter application can be used to generate images of circular and linear DNA maps to display regions and features of interest. The images can be inserted into a document or printed out directly. As this uses Artemis it can read in the common file formats EMBL, GenBank and GFF3.

DNAPlotter has three modes:

View

A grid of lines connects each of the sequences in the genome. The colour of the lines indicates whether the sequence is reverse or forward or intragenic.

See genome annotation and track data.

Cloning

Clone the genomic sequences of interest or existing clones using a “clone” action in Jemboss and add them to the database.

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OS: Windows 7/8/8.1/10
Processor: Intel® Core™ i5-6200U 2.2GHz 2.4GHz (or AMD equivalent)
Memory: 2GB RAM
Graphics: NVIDIA GeForce GTX 1050/AMD Radeon RX 560
Storage: 60GB available space
*This version of Quantum Break is optimized for NVIDIA GeForce GTX 1050 graphics cards and AMD Radeon RX 560 graphics cards. Quantum Break requires 2GB or more of graphics memory to operate.
The following additional hardware requirements are required for extra visual

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